Welcome to the 5th cohort of Open Life Science program!

Niklas Morberg (CC BY-NC 2.0)

The OLS-5 program

Purpose: Training for early stage researchers and young leaders interested in furthering their Open Science skills

Outcome: Ambassadors for Open Science practice, training and education across multiple European and international bioinformatics communities.

Process: A 16-week mentoring & training program, based on the Mozilla Open Leader program, helping participants in becoming Open Science ambassadors by using three principles:

  1. Sharing essential knowledge required to create, lead, and sustain an Open Science project.
  2. Connecting members across different communities, backgrounds, and identities by creating space in this program for them to share their experiences and expertise.
  3. Empowering them to become effective Open Science ambassadors in their communities.

Table of content

  1. Goals and Learning Objectives
  2. Timeline
  3. Schedule
  4. Role Descriptions
    1. Project leads (aka Mentees)
    2. Mentors
      1. Pool of mentors
      2. Mentoring training
    3. Experts
      1. Speakers during cohort calls
    4. Organizers
      1. Hosts for calls
  5. Collaborators
    1. OLS-5 for EOSC-Life
    2. OLS-5 for Faculty of Applied Sciences/TNW - TU Delft
    3. OLS-5 for Turing
  6. Resources
    1. Calls
      1. Cohort calls
      2. Mentor-mentee calls
      3. Coworking calls
      4. Mentors calls
    2. Speaker Guide
    3. Communication channels
      1. Communication within the cohort members
        1. OLS-5 Slack Channel
        2. OLS-5 private Google group
      2. Communication with members not in the cohort
        1. Twitter
        2. Gitter
        3. OLS Google group
  7. Community Participation Guidelines
    1. Diversity Statement
    2. Reporting Issues
    3. Attribution & Acknowledgements

Goals and Learning Objectives

The vision of Open Life Science program is to strengthen Open Science skills for early stage researchers and young leaders in life science.

At the end of the program, our participants will be able to:

  • Describe and define the terms openness, open science, open leadership, community interactions, value exchanges, inclusivity, accessibility, open Science practices in developing resources and training
  • Learn how to apply those principles to open leadership and working open in their projects and communities . Learn how to collect, invite, and tell stories that demonstrate how and why openness benefits the communities they serve
  • Give original examples for the types of openness in science
  • Design
    • Illustrate the need for a project, its vision, and its goals
    • Embrace and communicate the benefits of Open Science and how to strategically apply different open practices to their work
    • Identify the public resources to share their data
    • Identify the different type of Open Access and associated journals
  • Build
    • Start any project with openness in mind from day one
    • Setup a project repository on GitHub using best practices for enabling collaboration
    • Choose and apply open licenses appropriately
  • Empower
    • Create and enforce a safe working environment
    • Promote the values of Open Science to empower others to lead and collaborate
    • Include a broad range of contributors in their work
    • Communicate their work and vision in a 2min demo of elevator pitch
  • Lead an open project in science

Timeline

  • December 1, 2021: Call for Application opens on Open Review

    See the guidelines and templates

  • December 14, 2021: Application webinar( Talk + Q&A) - Notes with Zoom call link

    Watch recordings from previous webinars on YouTube

  • January 7, 2022: Application Clinic Call( Q&A)

    Register to attend the call.

  • January 15, 2022: Call for applications closed

  • February 1, 2022: Successful applicants announced

  • February 28, 2022: Start of the program

  • June 13, 2022: End of the program

Schedule

During the program,

Organizers will inform participants of the week schedule by email.

Subscribe to the OLS calendar

Week Call Date Topic Agenda
Week 00 (start. February 21, 2022) Mentor February 21, 2022 (18:00 European Time) Mentor onboarding group 1  
  Mentor February 22, 2022 (10:00 European Time) Mentor Skill Workshop by 360 Training - Group 1  
Week 01 (start. February 28, 2022) Mentor-Mentee   1st mentor-mentee meeting  
  Mentor March 02, 2022 (10:00 European Time) Mentor onboarding group 2  
  Mentor (16:00 European Time) Mentor onboarding group 1  
  Mentor March 02, 2022 (14:00 European Time) Mentor Skill Workshop by 360 Training - Group 2  
  Mentor March 03, 2022 (18:00 European Time) Mentor Skill Workshop by 360 Training - Group 3  
Week 02 (start. March 07, 2022) Cohort March 07, 2022 (18:00 European Time) Welcome to Open Life Science!  
Week 03 (start. March 14, 2022) Mentor-Mentee   2nd mentor-mentee meeting  
  Cohort March 16, 2022 (11:00 European Time) Welcome to Open Life Science!  
Week 04 (start. March 21, 2022) Cohort March 23, 2022 (11:00 European Time) Tooling and roadmapping for Open projects  
Week 05 (start. March 28, 2022) Mentor-Mentee   3rd mentor-mentee meeting  
  Skill-up March 28, 2022 (18:00 European Time) GitHub tutorial for beginners  
Week 06 (start. April 04, 2022) Cohort April 04, 2022 (18:00 European Time) Open Science I: Project Development and Introduction to Working Open  
Week 07 (start. April 11, 2022) Mentor-Mentee   4th mentor-mentee meeting  
  Q&A April 13, 2022 (11:00 European Time) Q&A call  
Week 08 (start. April 18, 2022) Cohort April 20, 2022 (11:00 European Time) Community design for inclusivity  
Week 09 (start. April 25, 2022) Mentor-Mentee   5th mentor-mentee meeting  
  Skill-up April 25, 2022 (18:00 European Time) Open Leadership: Academia, industry and beyond!  
Week 10 (start. May 02, 2022) Cohort May 02, 2022 (18:00 European Time) Open Science II: Knowledge Dissemination  
Week 11 (start. May 09, 2022) Mentor-Mentee   6th mentor-mentee meeting  
  Q&A May 11, 2022 (11:00 European Time) Q&A call  
Week 12 (start. May 16, 2022) Cohort May 18, 2022 (11:00 European Time) Diversity and Inclusion & Ally skills  
Week 13 (start. May 23, 2022) Mentor-Mentee   7th mentor-mentee meeting  
  Skill-up May 23, 2022 (18:00 European Time) Self-care & Social call  
Week 14 (start. May 30, 2022) Cohort May 30, 2022 (18:00 European Time) Open Science III: Next steps in open  
Week 15 (start. June 06, 2022) Mentor-Mentee   8th mentor-mentee meeting  
  Skill-up June 08, 2022 (11:00 European Time) Final presentation rehearsal - Group 1  
  Skill-up June 08, 2022 (11:00 European Time) Final presentation rehearsal - Group 2  
  Skill-up June 08, 2022 (11:00 European Time) Final presentation rehearsal - Group 3  
Week 16 (start. June 13, 2022) Cohort June 15, 2022 (11:00 European Time) Final presentations & Graduation! - Group 1  
  Cohort June 15, 2022 (11:00 European Time) Final presentations & Graduation! - Group 2  
  Cohort June 15, 2022 (11:00 European Time) Final presentations & Graduation! - Group 3  

Role Descriptions

Project leads (aka Mentees)

Participants join this program with a project that they either are already working on or want to develop during this program. More details about the role of a project lead (mentee) can be found here.

Mentors

Our project leads are supported in this program by our mentor-community who are paired based on the compatibility of expertise, interests and requirements of their projects. Our mentors are Open Science practitioners and champions with previous experiences in training and mentoring. They are currently working in different professions in data science, publishing, community building, software development, clinical studies, industries, scientific training and IT services.

Mentors advise and inspire

  • Connect: to people, programs, companies
  • Recommend: resources, readings, classes, experiences
  • Feedback: for the project leads to consider

Pool of mentors

We thank the 35 mentors this round.

The GitHub avatar of

Alejandro Coca Castro

Pronouns: His/Him
@alejo_coca

The Alan Turing Institute , United Kingdom

Expertise:
Spatial data science, Satellite imagery, Environmental science

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Anne Fouilloux

Pronouns: she/her
@AnneFouilloux

Nordic E-Infrastructure Collaboration (Neic), University Of Oslo, Norway. , Norway

Expertise:
Open science, Reproducible research, Fair software, Fair data

More about Anne

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Anne Treasure

@annemtreasure

Talarify , South Africa

Expertise:
Data life cycle, Data management, Open data, Open science, Reproducible research, Ecology, Biology, Marine sciences, Invasion biology, Terrestrial sciences, Climate change, Data pipelines and workflows, Biodiversity, Environment

More about Anne

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Arielle Bennett

Pronouns: she/her
@biotechchat

The Alan Turing Institute , United Kingdom

Expertise:
Road mapping and strategy planning, Community consultation, Culture change, Code of conducts, Community goals, Drug discovery, Computational biology, Neuroscience.

More about Arielle

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Batool Almarzouq

Pronouns: She/Her
@batool664

Kaimrc , Saudi Arabia

Expertise:
Reproducibility, Computational biology

More about Batool

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Beatriz Serrano-Solano

Pronouns: she/her
@Birthae

University Of Freiburg , Germany

Expertise:
Community management, Computational biology, Women in STEM, Ontologies, Imaging, R, Project management

More about Beatriz

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Burce Elbasan


University Ulm , Germany

Expertise:
Molecular genetics, Molecular mechanisms of cancer pathogenesis

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Deepak Unni

Pronouns: He/Him
@deepakunni3

European Molecular Biology Laboratory , Germany

Expertise:
Knowledge graphs, Bio-ontologies, Metadata management, Fair data principles

The GitHub avatar of

Diego Onna

Pronouns: He/Him
@DiegoOnna

University Of Buenos Aires , Argentina

Expertise:
Chemistry of materials, Nanomaterials, Machine learning, Chemometrics, Photochemistry, Physical chemistry, Chemical education

More about Diego

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Emma Karoune

Pronouns: She, her
@ekaroune

The Alan Turing Institute , United Kingdom

Expertise:
Fair data, Phytoliths, Environmental archaeology, Palaeoecology.

More about Emma

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Emmy Tsang

Pronouns: she/her
@emmy_ft

Delft University of Technology , Netherlands

Expertise:
Community strategies, Open research

More about Emmy

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Esther Plomp

Pronouns: she/her/hers
@PhDToothFAIRy

Delft University Of Technology - Faculty Of Applied Sciences , Netherlands

Expertise:
Open protocols, Open data, Research data management, FAIR, Archaeology, Bioanthropology, Isotopes, Osteology

More about Esther

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Fotis Psomopoulos

Pronouns: He/him
@fopsom

Institute Of Applied Biosciences, Centre For Research And Technology Hellas , Greece

Expertise:
Bioinformatics, Machine learning, Training, Open Science

More about Fotis

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Georgia Aitkenhead

Pronouns: She/her

The Alan Turing Institute , United Kingdom

Expertise:
Citizen science, Participatory science, Open source, Neurodiversity, Sensory processing, Co-creation

More about Georgia

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Gracielle Higino

Pronouns: She/her
@graciellehigino

University Of British Columbia , Canada

Expertise:
Reproducibility, Open data, Data management, Collaboration, Data synthesis, Science communication, Ecology, Biodiversity

More about Gracielle

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Julien Colomb

Pronouns: he/his
@j_colomb

Hu Berlin , Germany

Expertise:
Research data management, Open science, Scholarly communication, Neurosciences, Reproducible reports

More about Julien

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Stephan Heunis

Pronouns: he/him
@fmrwhy

Research Center Juelich, Germany , Germany

Expertise:
Research data management, Open source tools for code and data sharing, Signal processing with python;

More about Stephan

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Lena Karvovskaya

Pronouns: she, her
@Lingdata

Vu Amsterdam , Netherlands

Expertise:
Linguistics, Research data management, Fieldwork, Semantics, Typology

More about Lena

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Caleb Kibet

Pronouns: he/him
@calkibet

Kenya

Expertise:
Community building, Reproducibility, Computational Biology, Regulatory Genomics

More about Caleb

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Katharina Lauer

Pronouns: she/her
@lauerkatharina

Elixir , United Kingdom

Expertise:
Infectious diseases, Data driven life sciences, Entrepreneurship, Strategy, External relations

More about Katharina

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Lisanna Paladin

Pronouns: She/they
@LisannaPaladin

Embl Heidelberg , Germany

Expertise:
Protein structure, Protein features, Computational biology, Bioinformatics, Software engineering, Training

More about Lisanna

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Luis Pedro Coelho

Pronouns: he/them
@luispedrocoelho

Fudan University , China

Expertise:
Microbiome, Computational biology

More about Luis Pedro

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Malvika Sharan

Pronouns: she/her
@malvikasharan

United Kingdom

Expertise:
Community building, Mentoring, Data Science best practices, Inclusive and collaborative practices, Python, Git, Unix, Bioinformatics, Algorithm design

More about Malvika

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Meag Doherty

Pronouns: she/her
@emdohh

United States

Expertise:
Product strategy, Go to market, User research

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Michael Addy

Pronouns: He

Kwame Nkrumah University Of Science And Technology , Ghana

Expertise:
Building energy, Digital construction

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Mayya Sundukova

Pronouns: she/her
@mayya_sundukova

Spain

Expertise:
Neuroscience, Electrophysiology, Microscopy, Creative thinking, Reflection, Work-life balance, Mobility, Transition

More about Mayya

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Muhammet Celik

Pronouns: he/him

Turkey

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Alexander Martínez Méndez

@mxrtinez

La-Conga Physics - Universidad Industrial De Santander (Colombia) , Colombia

Expertise:
Science reproducibility

More about Alexander

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Patricia Herterich

Pronouns: she/her
@pherterich

Dcc, University Of Edinburgh , United Kingdom

Expertise:
Research data management, Fair data, Collaboration, Library and archiving skills, Open science and community

More about Patricia

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Sara Villa

Pronouns: She/her
@VillaScience

King'S College London , United Kingdom

Expertise:
Neuroscience, Pain research, Squencing analysis, Molecular biology

More about Sara

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Sebastián Ayala Ruano

Pronouns: he/him
@sayalaruano

Regional Student Group Ecuador, Part Of The International Society For Computational Biology Student Council , Ecuador

Expertise:
Bioinformatics, Network biology, Network science, Machine learning, Bioinformatics training, Gnu/linux, Terminal usage, Bash/awk scripting, Git/github

More about Sebastián

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Sara El-Gebali

Pronouns: she/her
@yalahowy

Scilifelab-Data Centre , Sweden

Expertise:
Research data management, Scientific biocuration, Fair principles, Computational inclusion, Digital equity, Life science, Curation

More about Sara

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Stephen Klusza

Pronouns: he/him/his
@codebiologist

Clayton State University , United States

Expertise:
Life sciences, Genetics, Synthetic biology, Accessibility

More about Stephen

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Renato Alves

Pronouns: he/him
@renato_alvs

European Molecular Biology Laboratory (EMBL) , Germany

Expertise:
Full-stack developer, Computational Training, Reproducibility, Computational biology, Metagenomics, Meta-transcriptomics

More about Renato

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Yo Yehudi

Pronouns: they/them
@yoyehudi

United Kingdom

Expertise:
Software development, Community building, Mentoring

More about Yo

Mentoring training

Mentorship roles can sound like a big personal responsibility and can be overwhelming for new mentors. To support our mentors in this program, we will offer training, topic-based guided discussions and opportunity for social interaction over 4 calls during the mentorship round:

  • 2 training calls in the beginning of the cohort to get participants trained and prepared for their role as mentors
  • 1 catch-up call in the middle of the cohort to discuss new topics and challenges that might have occurred and address them
  • 1 call at the end to capture experiences of mentors and assess their interest in future cohorts
  • Social and co-working calls schedule will be agreed among the mentors as per their needs and interests

In the mentor training, our mentors will then gain mentoring skills (active listening, effective questioning, giving feedback), learn to celebrate successes and gain confidence on navigating challenges in mentoring.

A dedicated slack channel will facilitate open discussions among mentors to help them discuss their experiences, challenges and tips and tricks (contact the team if you are not yet on this channel).

Experts

Experts are invited to join cohort calls or individual mentorship calls to share their experience and expertise during the program.

We thank the 26 persons who registered to be experts in this round.

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Alexandra Holinski

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Alex Chan

Pronouns: they/she
@alexwlchan

Wellcome Collection , United Kingdom

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Anne Treasure

@annemtreasure

Talarify , South Africa

Expertise:
Data life cycle, Data management, Open data, Open science, Reproducible research, Ecology, Biology, Marine sciences, Invasion biology, Terrestrial sciences, Climate change, Data pipelines and workflows, Biodiversity, Environment

More about Anne

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Cassandra Gould Van Praag

Pronouns: she/her
@cassgvp

University Of Oxford , United Kingdom

Expertise:
Neuroimaging, Community, Edi, Champions/ambassadors programme, Data sharing, Incentives/reward, Academia-to-professional services transition / research adjacent roles, Transparent and inclusive leadership.

More about Cassandra

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Deepak Unni

Pronouns: He/Him
@deepakunni3

European Molecular Biology Laboratory , Germany

Expertise:
Knowledge graphs, Bio-ontologies, Metadata management, Fair data principles

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Edward Wallace

Pronouns: he, him
@ewjwallace

University Of Edinburgh , United Kingdom

Expertise:
Gene expression, Rna, Yeast & fungi, Bioinformatics, Open science, Data literacy, Open science in project and teaching context, Practical github, R packages, Balancing open science with the rest of your career;

More about Edward

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Georgia Aitkenhead

Pronouns: She/her

The Alan Turing Institute , United Kingdom

Expertise:
Citizen science, Participatory science, Open source, Neurodiversity, Sensory processing, Co-creation

More about Georgia

The GitHub avatar of

Gudrun Gygli

Expertise:
Enzymology, Biochemstry, Bioinformatics, Molecular modelling, Molecular dynamics simulations, Deep eutectic solvents, Oxidoreductases, Data stewardship, Laboratory automation, Fair data

More about Gudrun

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Hao Ye

Pronouns: he/him
@Hao_and_Y

University Of Florida , United States

Expertise:
Ecology, Health sciences, R, Git and github, Version control, Time series analysis, Research reproducibility, Community management, Ally skills training

More about Hao

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Irene Ramos

Pronouns: she / her

National Commission For The Knowledge And Use Of Biodiversity (Conabio) , Mexico

Expertise:
Open data, Data management, Agrobiodiversity, Sustainability science, Inter and transdisciplinary research

More about Irene

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Iratxe Puebla

Pronouns: she/her
@IratxePuebla

Asapbio , United Kingdom

Expertise:
Preprints, Publishing, Open access, Data publication

More about Iratxe

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Jesper Dramsch

Pronouns: they
@jesperdramsch

Ecmwf , Germany

Expertise:
Machine learning, Diversity

More about Jesper

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Jez Cope

Pronouns: he/him
@jezcope

The British Library , United Kingdom

Expertise:
Research data management, Digital scholarship, Libraries, Open research, Licensing, Open data, Open scholarship, Open science, Research software engineering practice

More about Jez

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Joyce Kao

Pronouns: she/her
@joyceykao

Uniklinikum Rwth Aachen , Germany

Expertise:
Web applications, App/software development, Conference organization, Virtual events, Community building, Evolutionary biology, Computational biology

More about Joyce

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Stephan Heunis

Pronouns: he/him
@fmrwhy

Research Center Juelich, Germany , Germany

Expertise:
Research data management, Open source tools for code and data sharing, Signal processing with python;

More about Stephan

The GitHub avatar of

Lena Karvovskaya

Pronouns: she, her
@Lingdata

Vu Amsterdam , Netherlands

Expertise:
Linguistics, Research data management, Fieldwork, Semantics, Typology

More about Lena

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Katharina Lauer

Pronouns: she/her
@lauerkatharina

Elixir , United Kingdom

Expertise:
Infectious diseases, Data driven life sciences, Entrepreneurship, Strategy, External relations

More about Katharina

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Laura Carter

Pronouns: she/her
@LauraC_rter

University Of Essex , United Kingdom

Expertise:
Gender, Discrimination, Human rights, Feminism

More about Laura

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Luis Pedro Coelho

Pronouns: he/them
@luispedrocoelho

Fudan University , China

Expertise:
Microbiome, Computational biology

More about Luis Pedro

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Mayya Sundukova

Pronouns: she/her
@mayya_sundukova

Spain

Expertise:
Neuroscience, Electrophysiology, Microscopy, Creative thinking, Reflection, Work-life balance, Mobility, Transition

More about Mayya

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Patricia Herterich

Pronouns: she/her
@pherterich

Dcc, University Of Edinburgh , United Kingdom

Expertise:
Research data management, Fair data, Collaboration, Library and archiving skills, Open science and community

More about Patricia

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Raphael Sonabend

Pronouns: They/He
@RaphaelS101

Wellcome , United Kingdom

Expertise:
Machine learning, Ethical modelling, Risk and uncertainty communication, Transparent and accessible ai, Automl, Benchmarking, Survival analysis (and fundamental problems)

More about Raphael

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Renato Augusto Correa Dos Santos

Pronouns: He
@CorreaSantosRA

Changing From Unicamp To Another Institution (Post-Doc) , Brazil

Expertise:
Bioinformatics, Genomics, Transcriptomics, Omics, Education

More about Renato Augusto

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Sara El-Gebali

Pronouns: she/her
@yalahowy

Scilifelab-Data Centre , Sweden

Expertise:
Research data management, Scientific biocuration, Fair principles, Computational inclusion, Digital equity, Life science, Curation

More about Sara

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Stefanie Butland

Pronouns: she/her
@stefaniebutland

Ropensci , Canada

Expertise:
Building inclusive sustainable communities, Communicating in the open, Virtual events, Github, r, Open software peer review

More about Stefanie

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Teresa Cisneros

@chicanaEnLondon

United Kingdom

Expertise:
Equity, Diversity and inclusion (transformative justice approaches)

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Experts sorted by their expertise areas

A dedicated slack channel will facilitate open discussions among experts and other participants in OLS-5 to help them expand their network while discussing relevant topics (contact the team if you are not yet on this channel).

Speakers during cohort calls

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The GitHub avatar of

Alex Chan

Pronouns: they/she
@alexwlchan

Wellcome Collection , United Kingdom

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Batool Almarzouq

Pronouns: She/Her
@batool664

Kaimrc , Saudi Arabia

Expertise:
Reproducibility, Computational biology

More about Batool

The GitHub avatar of

Emma Karoune

Pronouns: She, her
@ekaroune

The Alan Turing Institute , United Kingdom

Expertise:
Fair data, Phytoliths, Environmental archaeology, Palaeoecology.

More about Emma

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Emmy Tsang

Pronouns: she/her
@emmy_ft

Delft University of Technology , Netherlands

Expertise:
Community strategies, Open research

More about Emmy

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Malvika Sharan

Pronouns: she/her
@malvikasharan

United Kingdom

Expertise:
Community building, Mentoring, Data Science best practices, Inclusive and collaborative practices, Python, Git, Unix, Bioinformatics, Algorithm design

More about Malvika

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Yo Yehudi

Pronouns: they/them
@yoyehudi

United Kingdom

Expertise:
Software development, Community building, Mentoring

More about Yo

Organizers

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Bérénice Batut

Pronouns: she/her
@bebatut

University of Freiburg , Germany

Expertise:
Galaxy, Galaxy training, Citizen science, Bioinformatics, High-throughput sequencing, Metagenomics, Wordpress, Jekyll, GitHub/GitLab Pages, Designing and developing training material, Collaborating with Git & GitHub/GitLab, Git, GitHub, GitLab, Publishing web content

More about Bérénice

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Emmy Tsang

Pronouns: she/her
@emmy_ft

Delft University of Technology , Netherlands

Expertise:
Community strategies, Open research

More about Emmy

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Malvika Sharan

Pronouns: she/her
@malvikasharan

United Kingdom

Expertise:
Community building, Mentoring, Data Science best practices, Inclusive and collaborative practices, Python, Git, Unix, Bioinformatics, Algorithm design

More about Malvika

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Yo Yehudi

Pronouns: they/them
@yoyehudi

United Kingdom

Expertise:
Software development, Community building, Mentoring

More about Yo

Hosts for calls

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Emma Karoune

Pronouns: She, her
@ekaroune

The Alan Turing Institute , United Kingdom

Expertise:
Fair data, Phytoliths, Environmental archaeology, Palaeoecology.

More about Emma

The GitHub avatar of

Emmy Tsang

Pronouns: she/her
@emmy_ft

Delft University of Technology , Netherlands

Expertise:
Community strategies, Open research

More about Emmy

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Malvika Sharan

Pronouns: she/her
@malvikasharan

United Kingdom

Expertise:
Community building, Mentoring, Data Science best practices, Inclusive and collaborative practices, Python, Git, Unix, Bioinformatics, Algorithm design

More about Malvika

The GitHub avatar of

Yo Yehudi

Pronouns: they/them
@yoyehudi

United Kingdom

Expertise:
Software development, Community building, Mentoring

More about Yo

Collaborators

OLS team have established the following collaborations to support organisation specific projects within the OLS-5 cohort:

OLS-5 for EOSC-Life

Open Life Science has received the EOSC-Life Training grant (first round), to train and mentor EOSC-RI members under the collaboration name OLS-5 for EOSC-Life. In the simplest terms, EOSC-Life is 13 European life science Research Infrastructures making their data FAIR (Findable, Accessible, Interoperable and Reusable) so that researchers can combine resources from multiple RIs for new research funded through our Open Calls and receive support through the variety of additional services we offer, including alignment with relevant standards and policies (GDPR, etc.).

OLS-5 for Faculty of Applied Sciences/TNW - TU Delft

Under the collaboration name OLS-5 for TNW, Open Life Science has partnered with the Faculty of Applied Sciences through the Faculty Graduate School and the Data Steward, Dr. Esther Plomp at TU Delft. This partnership will offer training and mentoring to interested members from the Faculty of Applied Sciences to join the 5th cohort (OLS-5) individually or in teams. They will have an opportunity to develop Open Science aspects in the projects that they either already have been working on, or want to develop in the near future. Mentors will be preferably selected within their own discipline, as PhD candidates will be eligible for 5 Discipline-related credits for their Doctoral Education Programme.

OLS-5 for Turing

Under the collaboration name OLS-5 for Turing, Open Life Science has partnered with The Turing Way, a project within the Tools, Practices and Systems Research Program in The Alan Turing Institute. This partnership will offer training and mentoring to interested members from Turing and The Turing Way communities to join the third cohort (OLS-5) individually or in teams. They will have an opportunity to develop Open Science aspects in the projects that they either already have been working on, or want to develop in the near future. Mentors will be preferably selected from The Alan Turing Institute but there will be a possibility to match projects with the right mentor from the broader cohort. The roles and benefits for the participants and the eligibility of proposed projects will be as described for our main program.

This program will provide a unique opportunity to individuals and teams in these organisations to integrate best practices for open and reproducible research in new or ongoing projects.

Resources

The resources available to the OLS-5 cohort members will facilitate their communication, training, mentoring and learning process during their participation in the program.

Calls

Cohort calls

The full cohort meetings take place every 2 weeks (unless mentioned otherwise) and last for 90 minutes.

During these calls:

  • Organisers/hosts will introduce new topic of the week
  • Speakers will present their work related to the topic of the week
  • Participants will be given group discussion exercises
  • An open Q&A will be run and notes will be co-developed
  • Exercises will be given for the week to be completed before the mentee-mentor meeting

The calls will be hosted online using the Zoom web-conferencing option. A link for the calls will be shared for each meeting separately.

Look up the shared notes for each call linked to the schedule in this website. You will also be updated via email each week by the organisers with additional details to aid your participation.

If you can’t make it to a call:

The call will be recorded and available on the OLS YouTube channel after the call.

If you can not attend most calls during the program due to the time zone incompatibility or other personal obligation, please let the organisers know. If you are unable to communicate with your mentor regularly or do not engage in the program as planned, we may need to evaluate if you are able to finish the program.

Mentor-mentee calls

The Mentor-mentee calls take place every 2 weeks (unless mentioned otherwise) and last for 30 minutes.

During these calls:

  • Mentors help their mentees evaluate their understanding of the new topics
  • Mentees will complete their task assigned at the cohort calls using new skills learned that week
  • Mentors and mentee will review progress together where mentees provide constructive feedback
  • Mentors will connect mentees with other experts and get consulted on their project when needed

Coordinate with your mentor how you manage the notes and assignments for your 1:1 calls.

The online communication options can be agreed upon by the mentor-mentee pairs. A few options to explore are the following:

  • Zoom: 40 mins limit for each call
  • Google hangout: Free for members with google account
  • Skype: Free, download the app
  • Whereby.com: Free option, valid upto 4 participants
  • Jitsi: Free, open source web-based call is possible
  • Whatsapp or other phone-based calls: Only if both mentor and mentee are comfortable with exchanging numbers

If a mentor has to miss a mentee-mentor meeting, please discuss it with your mentee and reschedule your call. If you are unable to make it to any slot together, please find other ways (asynchronous documentation) to interact with your mentee.

If a mentor has to step back from the program for any reason, please communicate with the organisers to identify an alternative for their mentees.

Coworking calls

The coworking sessions take place in weeks during which there is not cohort call. These calls are optional but highly valuable for enhancing your understanding of the materials discussed in OLS-5 with the help of other participants.

During these calls,

  • Participants can work together on the assignments
  • Participants connect and talk about their projects

The calls will be hosted online using the Zoom web-conferencing option. A link for the calls will be shared for each meeting separately.

Mentors calls

4 mentor calls will take place during the program.

The calls will be hosted online using the Zoom web-conferencing option. A link for the calls will be shared for each meeting separately.

Speaker Guide

We have a short guide for invited speakers.

Communication channels

Communication within the cohort members

OLS-5 Slack Channel

A dedicated Slack channel has been setup to facilitate real-time as well as asynchronous communication among the all members of the OLS-5 cohort. A personal invitation link will be shared with the participants via an email.

OLS-5 private Google group

Organizers inform participants of the week schedule by email. An archive of all emails can be found on the private OLS-5 Google group.

An invitation is sent to all participants (mentees, mentors, etc) at the beginning of the program. If it is not the case, please contact the team

Communication with members not in the cohort

Twitter

General updates from the program such as new posts, collaborations and relevant retweets will be shared via our official Twitter channel.

Gitter

We have a public Gitter channel that can be used by members of the public contact the OLS team and community.

OLS Google group

Updates regarding new calls for applications, announcements, and final project presentations are posted on the OLS public Google group

Community Participation Guidelines

As a community we welcome everyone, and encourage a friendly and positive environment.

This code of conduct outlines our expectations for participants within the community, as well as steps to reporting unacceptable behavior. We are committed to providing a welcoming and inspiring community for all and expect our code of conduct to be honored. Anyone who violates this code of conduct may be banned from the community.

Our open source community strives to:

  • Be friendly and patient.

  • Be welcoming: We strive to be a community that welcomes and supports people of all backgrounds and identities. This includes, but is not limited to members of any race, ethnicity, culture, national origin, colour, immigration status, social and economic class, educational level, sex, sexual orientation, gender identity and expression, age, size, family status, political belief, religion, and mental and physical ability.

  • Be considerate: Your work will be used by other people, and you in turn will depend on the work of others. Any decision you take will affect users and colleagues, and you should take those consequences into account when making decisions. Remember that we’re a world-wide community, so you might not be communicating in someone else’s primary language.

  • Be respectful: Not all of us will agree all the time, but disagreement is no excuse for poor behavior and poor manners. We might all experience some frustration now and then, but we cannot allow that frustration to turn into a personal attack. It’s important to remember that a community where people feel uncomfortable or threatened is not a productive one.

  • Be careful in the words that we choose: We are a community of professionals, and we conduct ourselves professionally. Be kind to others. Do not insult or put down other participants. Harassment and other exclusionary behavior aren’t acceptable. This includes, but is not limited to: Violent threats or language directed against another person, Discriminatory jokes and language, Posting sexually explicit or violent material, Posting (or threatening to post) other people’s personally identifying information (“doxing”), Personal insults, especially those using racist or sexist terms, Unwelcome sexual attention, Advocating for, or encouraging, any of the above behavior, Repeated harassment of others. In general, if someone asks you to stop, then stop.

  • Try to understand why we disagree: Disagreements, both social and technical, happen all the time. It is important that we resolve disagreements and differing views constructively. Remember that we’re different. Diversity contributes to the strength of our community, which is composed of people from a wide range of backgrounds. Different people have different perspectives on issues. Being unable to understand why someone holds a viewpoint doesn’t mean that they’re wrong. Don’t forget that it is human to err and blaming each other doesn’t get us anywhere. Instead, focus on helping to resolve issues and learning from mistakes.

Diversity Statement

We encourage everyone to participate and are committed to building a community for all. Although we will fail at times, we seek to treat everyone both as fairly and equally as possible. Whenever a participant has made a mistake, we expect them to take responsibility for it. If someone has been harmed or offended, it is our responsibility to listen carefully and respectfully, and do our best to right the wrong.

Although this list cannot be exhaustive, we explicitly honor diversity in age, gender, gender identity or expression, culture, ethnicity, language, national origin, political beliefs, profession, race, religion, sexual orientation, socioeconomic status, and technical ability. We will not tolerate discrimination based on any of the protected characteristics above, including participants with disabilities.

Reporting Issues

If you experience or witness unacceptable behavior, or have any other concerns, please report it by contacting the organisers - Bérénice, Malvika and Yo. (team@openlifesci.org).

To report an issue involving one of the members, please email one of the members individually (berenice@openlifesci.org, malvika@openlifesci.org, yo@openlifesci.org).

All reports will be handled with discretion. In your report please include:

  • Your contact information.

  • Names (real, nicknames, or pseudonyms) of any individuals involved. If there are additional witnesses, please include them as well. Your account of what occurred, and if you believe the incident is ongoing. If there is a publicly available record (e.g. a mailing list archive or a public IRC logger), please include a link.

  • Any additional information that may be helpful.

After filing a report, a representative will contact you personally, review the incident, follow up with any additional questions, and make a decision as to how to respond. If the person who is harassing you is part of the response team, they will recuse themselves from handling your incident. If the complaint originates from a member of the response team, it will be handled by a different member of the response team. We will respect confidentiality requests for the purpose of protecting victims of abuse.

Attribution & Acknowledgements

This code of conduct is based on the Open Code of Conduct from the TODOGroup.